Wednesday, April 23, 2014

Novel mechanism for cancer metastasis - Hosein Kouros-Mehr

Thursday, April 10, 2014

Novel mutations discovered in a form of ovarian cancer Hosein Kouros-Mehr





A recent paper* in Nature Genetics discovered mutations in the SMARCA4 gene in a form of ovarian cancer known as small cell carcinoma of the ovary.  This cancer is highly aggressive and mostly affects young women.  The authors sequenced tumors from 12 patients and discovered loss of function mutations in SMARCA4 in 100% of the patients (probability of that happening by chance is less than 0.0000000000000002).  The importance of this finding is that it may lead to targeted therapies that can be tailored for patients with this disease.  

The SMARCA4 gene is an ATP-dependent helicase that is part of the SWI/SNF complex.  This complex regulates chromatin remodeling and is important for transcriptional activation of genes that may be normally silenced in heterochromatin.  SWI/SNF complex is composed of many proteins and its mechanism of action is largely unknown, but it is thought that SWI/SNF can destabilize histone-DNA interaction in an ATP-dependent manner and lead to chromatin remodeling of target genes, thereby altering the accessibility and transcription of the target genes.  SMARCA4 is a ATP-dependent helicase, which means it helps separate/unwind the strands of DNA using energy derived from ATP hydrolysis.  

The authors found that SMARCA4 mutations in these patients were all loss of function mutations that lead to significantly less SMARCA4 protein in the cells. Interestingly, the overexpression of SMARCA4 in SMARCA4-null cancer cell lines led to suppression of cell growth, suggesting that SMARCA4 is a bona fide tumor suppressor.  The depletion of SMACA4 using lentiviral shRNA knockdown led to increase cell growth in cell lines.  

SMARCA4 mutations are also found in bladder cance, stomach cancer, lung cancer, and glioma (5-8% frequency).  Most of these are missense mutations of uncertain consequence, though lung cancers contained frequent inactivating SMARCA4 mutations.  Further work will be necessary to identify candidate targets for drug discovery in SMARCA4 mutant tumors.  For example, the SMARCA2 ATPase may be upregulated in SMARCA4 mutant tumors and could be a candidate target in this patient population.  Further validation will be necessary to evaluate this potential new target.  

Jelinic, P., et. al.  (2014).  Recurrent SMARCA4 mutations in small cell carcinoma of the ovary.  



Nature Genetics
 
23 March 2014

Hosein Kouros-Mehr

Monday, April 7, 2014

the end of Tech Bubble 2.0? Hosein Kouros-Mehr

Is this the beginning of the end?

We are all familiar with the tech bubble of the late 1990s and crash in the early 2000s.  Could the charts be setting up for a similar tech crash this year?  While it is too early to tell, there are worrisome developments in technology stocks that could easily trigger a correction is not an outright crash over the next 12 months.  While this is a purely technical argument, the Nasdaq has not reached the highs of the 2000s and the animal spirits in today's market do not match those in the earlier bubble.  But it could be the memories of the first tech bubble crash that prevents the rise of the 2nd tech bubble today.

Here is the weekly Nasdaq-100 chart from 1998-2001.  Beginning in October 1998, the Nasdaq-100 spent 17 months above the 20 day weekly moving average and tested it 4 times during that time.  Then came a blow off top with a huge bearish engulfing candle that pierced the 20 day MA in March 2000.  It wasn't until 6 months later that it failed at the 50 day MA and began to crash to pre-rally levels.  The technical damage occurred swiftly and came as a surprise to many.  The wise ones took their money out during the period of consolidation before the crash.




Here is the Nasdaq-100 chart from the last two years. As in the previous chart, the Nasdaq-100 spent 15 months above the 20 day MA and tested it 4 times.  Over the last week it broke through the 20 day MA to the downside.  To continue the uptrend as it stands, the Nasdaq-100 will need to bounce quickly above the 20 day MA and while Janet Yellen may be the one who can do that, it appears that it's time to test the 50 day MA.  While it's too early to say whether "Tech Bubble 2.0" is truly over, caution is warranted in the near term.




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Hosein Kouros-Mehr